Whiteaker, Jeffrey: search on Z-Library

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1

Quantifying the human proteome

Paulovich, Amanda G, Whiteaker, Jeffrey R

Journal:

Nature Biotechnology

Year:

2016

Language:

english

File:

PDF, 332 KB

english, 2016

2

Clinical potential of mass spectrometry-based proteogenomics

Zhang, Bing, Whiteaker, Jeffrey R., Hoofnagle, Andrew N., Baird, Geoffrey S., Rodland, Karin D., Paulovich, Amanda G.

Journal:

Nature Reviews Clinical Oncology (formerly Nature Clinical Practice Oncology)

Year:

2018

Language:

english

File:

PDF, 1.09 MB

english, 2018

3

A targeted proteomics–based pipeline for verification of biomarkers in plasma

Whiteaker, Jeffrey R, Lin, Chenwei, Kennedy, Jacob, Hou, Liming, Trute, Mary, Sokal, Izabela, Yan, Ping, Schoenherr, Regine M, Zhao, Lei, Voytovich, Uliana J, Kelly-Spratt, Karen S, Krasnoselsky, Alex

Journal:

Nature Biotechnology

Year:

2011

Language:

english

File:

PDF, 1.00 MB

english, 2011

4

High-Affinity Recombinant Antibody Fragments (Fabs) Can Be Applied in Peptide Enrichment Immuno-MRM Assays

Whiteaker, Jeffrey R., Zhao, Lei, Frisch, Christian, Ylera, Francisco, Harth, Stefan, Knappik, Achim, Paulovich, Amanda G.

Journal:

Journal of Proteome Research

Year:

2014

Language:

english

File:

PDF, 1.64 MB

english, 2014

5

[WORLD SCIENTIFIC Proceedings of the Pacific Symposium - Maui, Hawaii (3 – 7 January 2006)] Biocomputing 2006 - NORMALIZATION REGARDING NON-RANDOM MISSING VALUES IN HIGH-THROUGHPUT MASS SPECTROMETRY DATA

WANG, PEI, TANG, HUA, ZHANG, HEIDI, WHITEAKER, JEFFREY, PAULOVICH, AMANDA G, MCINTOSH, MARTIN

Language:

english

File:

PDF, 608 KB

english

6

Identification of a Blood-Based Protein Biomarker Panel for Lung Cancer Detection

El-Khoury, Victoria, Schritz, Anna, Kim, Sang-Yoon, Lesur, Antoine, Sertamo, Katriina, Bernardin, FranÃ§ois, Petritis, Konstantinos, Pirrotte, Patrick, Selinsky, Cheryl, Whiteaker, Jeffrey R., Zhang,

Journal:

Year:

2020

File:

PDF, 668 KB

2020

7

Proteome and transcriptome profiles of a Her2/Neu-driven mouse model of breast cancer

Regine M. Schoenherr, Karen S. Kelly-Spratt, ChenWei Lin, Jeffrey R. Whiteaker, Tao Liu, Ted Holzman, Ilsa Coleman, Li-Chia Feng, Travis D. Lorentzen, Alexei L. Krasnoselsky, Pei Wang, Yan Liu, Kay E.

Journal:

PROTEOMICS - Clinical Applications

Year:

2011

Language:

english

File:

PDF, 193 KB

english, 2011

8

Anti-Peptide Monoclonal Antibodies Generated for Immuno-Multiple Reaction Monitoring-Mass Spectrometry Assays Have a High Probability of Supporting Western blot and ELISA

Schoenherr, Regine M., Saul, Richard G., Whiteaker, Jeffrey R., Yan, Ping, Whiteley, Gordon R., Paulovich, Amanda G.

Journal:

Molecular & Cellular Proteomics

Year:

2015

Language:

english

File:

PDF, 7.95 MB

english, 2015

9

Quantification of Proteins Using Peptide Immunoaffinity Enrichment Coupled with Mass Spectrometry

Zhao, Lei, Whiteaker, Jeffrey R., Pope, Matthew E., Kuhn, Eric, Jackson, Angela, Anderson, N. Leigh, Pearson, Terry W., Carr, Steven A., Paulovich, Amanda G.

Journal:

Journal of Visualized Experiments

Year:

2011

Language:

english

File:

PDF, 229 KB

english, 2011

10

Peptide Immunoaffinity Enrichment Coupled with Mass Spectrometry for Peptide and Protein Quantification

Whiteaker, Jeffrey R., Paulovich, Amanda G.

Journal:

Clinics in Laboratory Medicine

Year:

2011

Language:

english

File:

PDF, 455 KB

english, 2011

11

pRAD50: a novel and clinically applicable pharmacodynamic biomarker of both ATM and ATR inhibition identified using mass spectrometry and immunohistochemistry

Jones, Gemma N., Rooney, Claire, Griffin, Nicola, Roudier, Martine, Young, Lucy A., Garcia-Trinidad, Antonio, Hughes, Gareth D., Whiteaker, Jeffrey R., Wilson, Zena, Odedra, Rajesh, Zhao, Lei, Ivey, R

Journal:

British Journal of Cancer

Year:

2018

Language:

english

File:

PDF, 2.19 MB

english, 2018

12

Head-to-Head Comparison of Serum Fractionation Techniques

Whiteaker, Jeffrey R., Zhang, Heidi, Eng, Jimmy K., Fang, Ruihua, Piening, Brian D., Feng, Li-Chia, Lorentzen, Travis D., Schoenherr, Regine M., Keane, John F., Holzman, Ted

Journal:

Journal of Proteome Research

Year:

2007

Language:

english

File:

PDF, 256 KB

english, 2007

13

Instrument Busy Time and Mass Measurement using Aerosol Time-of-Flight Mass Spectrometry

Allen, Jonathan O., Bhave †, Prakash V., Whiteaker, Jeffrey R., Prather, Kimberly A.

Journal:

Aerosol Science & Technology

Year:

2006

Language:

english

File:

PDF, 1.36 MB

english, 2006

14

Commercially available antibodies can be applied in quantitative multiplexed peptide immunoaffinity enrichment targeted mass spectrometry assays

Schoenherr, Regine M., Zhao, Lei, Ivey, Richard G., Voytovich, Uliana J., Kennedy, Jacob, Yan, Ping, Lin, Chenwei, Whiteaker, Jeffrey R., Paulovich, Amanda G.

Journal:

Year:

2016

Language:

english

File:

PDF, 327 KB

english, 2016

15

Multiplexed quantification of estrogen receptor and HER2/Neu in tissue and cell lysates by peptide immunoaffinity enrichment mass spectrometry

Regine M. Schoenherr, Jeffrey R. Whiteaker, Lei Zhao, Richard G. Ivey, Mary Trute, Jacob Kennedy, Uliana J. Voytovich, Ping Yan, Chenwei Lin, Amanda G. Paulovich

Journal:

Year:

2012

Language:

english

File:

PDF, 657 KB

english, 2012

16

Demonstrating the feasibility of large-scale development of standardized assays to quantify human proteins

Kennedy, Jacob J, Abbatiello, Susan E, Kim, Kyunggon, Yan, Ping, Whiteaker, Jeffrey R, Lin, Chenwei, Kim, Jun Seok, Zhang, Yuzheng, Wang, Xianlong, Ivey, Richard G, Zhao, Lei, Min, Hophil, Lee, Youngj

Journal:

Year:

2013

Language:

english

File:

PDF, 1.08 MB

english, 2013

17

Quality Control Metrics for LC−MS Feature Detection Tools Demonstrated on Saccharomyces c erevisiae Proteomic Profiles

Piening, Brian D., Wang, Pei, Bangur, Chaitanya S., Whiteaker, Jeffrey, Zhang, Heidi, Feng, Li-Chia, Keane, John F., Eng, Jimmy K., Tang, Hua, Prakash, Amol, McIntosh, Martin W., Paulovich, Amanda

Journal:

Journal of Proteome Research

Year:

2006

Language:

english

File:

PDF, 753 KB

english, 2006

18

CPTAC Assay Portal: a repository of targeted proteomic assays

Whiteaker, Jeffrey R, Halusa, Goran N, Hoofnagle, Andrew N, Sharma, Vagisha, MacLean, Brendan, Yan, Ping, Wrobel, John A, Kennedy, Jacob, Mani, D R, Zimmerman, Lisa J, Meyer, Matthew R, Mesri, Mehdi,

Journal:

Year:

2014

Language:

english

File:

PDF, 266 KB

english, 2014

19

Integrated Proteogenomic Characterization across Major Histological Types of Pediatric Brain Cancer

Petralia, Francesca, Tignor, Nicole, Reva, Boris, Koptyra, Mateusz, Chowdhury, Shrabanti, Rykunov, Dmitry, Krek, Azra, Ma, Weiping, Zhu, Yuankun, Ji, Jiayi, Calinawan, Anna, Whiteaker, Jeffrey R., Col

Journal:

Year:

2020

File:

PDF, 625 KB

2020

20

The evolving role of mass spectrometry in cancer biomarker discovery

Wang, Pei, Whiteaker, Jeffrey R., Paulovich, Amanda G.

Journal:

Cancer Biology & Therapy

Year:

2009

Language:

english

File:

PDF, 5.56 MB

english, 2009

21

Antibody-based enrichment of peptides on magnetic beads for mass-spectrometry-based quantification of serum biomarkers

Jeffrey R. Whiteaker, Lei Zhao, Heidi Y. Zhang, Li-Chia Feng, Brian D. Piening, Leigh Anderson, Amanda G. Paulovich

Journal:

Analytical Biochemistry

Year:

2007

Language:

english

File:

PDF, 611 KB

english, 2007

22

Peptide immunoaffinity enrichment and targeted mass spectrometry enables multiplex, quantitative pharmacodynamic studies of phospho-signaling

Whiteaker, Jeffrey R., Zhao, Lei, Yan, Ping, Ivey, Richard G., Voytovich, Uliana J., Moore, Heather D., Lin, Chenwei, Paulovich, Amanda G.

Journal:

Molecular & Cellular Proteomics

Year:

2015

Language:

english

File:

PDF, 2.43 MB

english, 2015

23

Antibody-Coupled Magnetic Beads Can Be Reused in Immuno-MRM Assays To Reduce Cost and Extend Antibody Supply

Zhao, Lei, Whiteaker, Jeffrey R., Voytovich, Uliana J., Ivey, Richard G., Paulovich, Amanda G.

Journal:

Journal of Proteome Research

Year:

2015

Language:

english

File:

PDF, 2.51 MB

english, 2015

24

Proteolytic immuno-SRM-MSMS in dried blood spots to determine immunogenicity in patients with infantile Pompe disease

Chang, Irene J., Dayuha, Remwilyn, Lee, Jeongho, Jung, Sunhee, Jack, Rhona, Lam, Christina T., Merritt, John Lawrence, Sun, Angela, Schoenherr, Regine M., Whiteaker, Jeffrey R., Paulovich, Amanda G.,

Journal:

Molecular Genetics and Metabolism

Year:

2018

Language:

english

File:

PDF, 53 KB

english, 2018

25

Quantification of ATP7B protein in Dried Blood Spots by Peptide Immuno-SRM as a potential screen for Wilson Disease

Jung, Sunhee, Whiteaker, Jeffrey R., Zhao, Lei, Yoo, Han-Wook, Paulovich, Amanda G, Hahn, Si Houn

Journal:

Journal of Proteome Research

Year:

2016

Language:

english

File:

PDF, 983 KB

english, 2016

26

[IEEE 2007 IEEE International Conference on Acoustics, Speech and Signal Processing - ICASSP '07 - Honolulu, HI, USA (2007.04.15-2007.04.20)] 2007 IEEE International Conference on Acoustics, Speech and Signal Processing - ICASSP '07 - Near-Lossless Compression of Mass Spectra for Proteomics

Miguel, Agnieszka C., Kearney-Fischer, Martin, Keane, John F., Whiteaker, Jeffrey, Feng, Li-Chia, Paulovich, Amanda

Year:

2007

Language:

english

File:

PDF, 4.41 MB

english, 2007

27

The interface between biomarker discovery and clinical validation: The tar pit of the protein biomarker pipeline

Amanda G. Paulovich, Jeffrey R. Whiteaker, Andrew N. Hoofnagle, Pei Wang

Journal:

PROTEOMICS - Clinical Applications

Year:

2008

Language:

english

File:

PDF, 377 KB

english, 2008

28

Effect of Collision Energy Optimization on the Measurement of Peptides by Selected Reaction Monitoring (SRM) Mass Spectrometry

MacLean, Brendan, Tomazela, Daniela M., Abbatiello, Susan E., Zhang, Shucha, Whiteaker, Jeffrey R., Paulovich, Amanda G., Carr, Steven A., MacCoss, Michael J.

Journal:

Analytical Chemistry

Year:

2010

Language:

english

File:

PDF, 2.67 MB

english, 2010

29

A Multiplexed Mass Spectrometry-Based Assay for Robust Quantification of Phosphosignaling in Response to DNA Damage

Whiteaker, Jeffrey R., Zhao, Lei, Saul, Rick, Kaczmarczyk, Jan A., Schoenherr, Regine M., Moore, Heather D., Jones-Weinert, Corey, Ivey, Richard G., Lin, Chenwei, Hiltke, Tara, Reding, Kerryn W., Whit

Journal:

Radiation Research

Year:

2018

Language:

english

File:

PDF, 1.41 MB

english, 2018

30

Quantification of Estrogen Receptor, Progesterone Receptor, and Human Epidermal Growth Factor Receptor 2 Protein Expression in Bone Biopsies by Targeted Mass Spectrometry without Acid Decalcification

Schoenherr, Regine M, Voytovich, Uliana J, Whiteaker, Jeffrey R, Gadi, Vijayakrishna K, Gralow, Julie R, Paulovich, Amanda G

Journal:

Clinical Chemistry

Year:

2020

File:

PDF, 325 KB

2020

31

Detection of Pesticide Residues on Individual Particles

Whiteaker, Jeffrey R., Prather, Kimberly A.

Journal:

Analytical Chemistry

Year:

2003

Language:

english

File:

PDF, 131 KB

english, 2003

32

Rapid Multiplexed Proteomic Screening for Primary Immunodeficiency Disorders From Dried Blood Spots

Collins, Christopher J., Chang, Irene J., Jung, Sunhee, Dayuha, Remwilyn, Whiteaker, Jeffrey R., Segundo, Gesmar R. S., Torgerson, Troy R., Ochs, Hans D., Paulovich, Amanda G., Hahn, Si Houn

Journal:

Frontiers in Immunology

Year:

2018

Language:

english

File:

PDF, 1.90 MB

english, 2018

33

Effects of Meteorological Conditions on Aerosol Composition and Mixing State in Bakersfield, CA

Whiteaker, Jeffrey R., Suess, David T., Prather, Kimberly A.

Journal:

Environmental Science & Technology

Year:

2002

Language:

english

File:

PDF, 863 KB

english, 2002

34

Monitoring Stock-Specific Abundance, Run Timing, and Straying of Chinook Salmon in the Columbia River Using Genetic Stock Identification (GSI)

Hess, Jon E., Whiteaker, John M., Fryer, Jeffrey K., Narum, Shawn R.

Journal:

North American Journal of Fisheries Management

Year:

2014

Language:

english

File:

PDF, 877 KB

english, 2014

35

Targeted mass spectrometry enables robust quantification of FANCD2 mono-ubiquitination in response to DNA damage

Whiteaker, Jeffrey R., Zhao, Lei, Ivey, Richard G., Sanchez-Bonilla, Marilyn, Moore, Heather D., Schoenherr, Regine M., Yan, Ping, Lin, Chenwei, Shimamura, Akiko, Paulovich, Amanda G.

Journal:

Year:

2018

Language:

english

File:

PDF, 1018 KB

english, 2018

36

Disappearing Subsidiaries: The Cases of Google and Oracle

Gramlich, Jeffrey D., Whiteaker-Poe, Janie

Journal:

SSRN Electronic Journal

Year:

2013

Language:

english

File:

PDF, 404 KB

english, 2013

37

Quantitative Determination of Heme for Forensic Characterization of Bacillus Spores Using Matrix-Assisted Laser Desorption/Ionization Time-of-Flight Mass Spectrometry

Whiteaker, Jeffrey R., Fenselau, Catherine C., Fetterolf, Dean, Steele, Darin, Wilson, David

Journal:

Analytical Chemistry

Year:

2004

Language:

english

File:

PDF, 82 KB

english, 2004

38

Integrated Pipeline for Mass Spectrometry-Based Discovery and Confirmation of Biomarkers Demonstrated in a Mouse Model of Breast Cancer

Whiteaker, Jeffrey R., Zhang, Heidi, Zhao, Lei, Wang, Pei, Kelly-Spratt, Karen S., Ivey, Richard G., Piening, Brian D., Feng, Li-Chia, Kasarda, Erik, Gurley, Kay E., Eng, Jimmy K., Chodosh, Lewis A.,

Journal:

Journal of Proteome Research

Year:

2007

Language:

english

File:

PDF, 431 KB

english, 2007

39

Optimized Protocol for Quantitative Multiple Reaction Monitoring-Based Proteomic Analysis of Formalin-Fixed, Paraffin-Embedded Tissues

Kennedy, Jacob J., Whiteaker, Jeffrey R., Schoenherr, Regine M., Yan, Ping, Allison, Kimberly, Shipley, Melissa, Lerch, Melissa, Hoofnagle, Andrew N., Baird, Geoffrey Stuart, Paulovich, Amanda G.

Journal:

Journal of Proteome Research

Year:

2016

Language:

english

File:

PDF, 1.98 MB

english, 2016

40

Differential adult migration-timing and stock-specific abundance of steelhead in mixed stock assemblages

Hess, Jon E., Ackerman, Michael W., Fryer, Jeffrey K., Hasselman, Daniel J., Steele, Craig A., Stephenson, Jeff J., Whiteaker, John M., Narum, Shawn R.

Journal:

ICES Journal of Marine Science

Year:

2016

Language:

english

File:

PDF, 1.31 MB

english, 2016

41

Automated screening of monoclonal antibodies for SISCAPA assays using a magnetic bead processor and liquid chromatography-selected reaction monitoring-mass spectrometry

Regine M. Schoenherr, Lei Zhao, Jeffrey R. Whiteaker, Li-Chia Feng, Li Li, Lina Liu, Xiuwen Liu, Amanda G. Paulovich

Journal:

Journal of Immunological Methods

Year:

2010

Language:

english

File:

PDF, 669 KB

english, 2010

42

Hydroxymethanesulfonate as a tracer for fog processing of individual aerosol particles

Jeffrey R Whiteaker, Kimberly A Prather

Journal:

Atmospheric Environment

Year:

2003

Language:

english

File:

PDF, 385 KB

english, 2003

43

Complete sequences of small acid-soluble proteins from Bacillus globigii

Jeffrey R. Whiteaker, Bettina Warscheid, Partick Pribil, Yetrib Hathout, Catherine Fenselau

Journal:

Journal of Mass Spectrometry

Year:

2004

Language:

english

File:

PDF, 572 KB

english, 2004

44

Panorama: A Targeted Proteomics Knowledge Base

Sharma, Vagisha, Eckels, Josh, Taylor, Greg K., Shulman, Nicholas J., Stergachis, Andrew B., Joyner, Shannon A., Yan, Ping, Whiteaker, Jeffrey R., Halusa, Goran N., Schilling, Birgit, Gibson, Bradford

Journal:

Journal of Proteome Research

Year:

2014

Language:

english

File:

PDF, 1.31 MB

english, 2014

45

Analysis of Bacillus anthracis Spores in Milk Using Mass Spectrometry

Whiteaker, Jeff, Karns, Jeffrey, Fenselau, Catherine, Perdue, Michael L.

Journal:

Foodborne Pathogens & Disease

Year:

2004

Language:

english

File:

PDF, 255 KB

english, 2004

46

Multiplexed Proteomic Analysis for Diagnosis and Screening of Five Primary Immunodeficiency Disorders From Dried Blood Spots

Collins, Christopher J., Yi, Fan, Dayuha, Remwilyn, Whiteaker, Jeffrey R., Ochs, Hans D., Freeman, Alexandra, Su, Helen C., Paulovich, Amanda G., Segundo, Gesmar R. S., Torgerson, Troy, Hahn, Si Houn

Journal:

Frontiers in Immunology

Year:

2020

File:

PDF, 1.10 MB

2020

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